[Editor’s note: Spent the last week in Jamaica, stalking the elusive social shrimp for an ongoing biogeographic study supported by the National Geographic Society. “Irie” is a Jamaican, and more specifically Rastafarian, general purpose word that is said to refer to “high emotions and peaceful vibrations“. Our team resolved to name the first new species we found on the trip Synalpheus irie. Following is an entry from the journal:]
Man, how I love working in the Caribbean. The escape from routine, the healthful vigor of the work for body, mind, and spirit — working in the open air, in the water, wiithout shoes for days on end, focusing on a single goal for a week at a time — unheard of in splintered everyday life where concentrating on one task for even a few hours seems a luxury. The opportunity for quiet reflection is worth more than any lesson from a master, any drug, any expensive therapy — merely being able to live simply for a while.
The last day, at dusk, after sitting hunched over the picnic table picking sponges and curating the specimens all day, we got in the water for a break. I was tired and uninspired, and joined only for a little exercise and to be a good sport. The water near the dock was characteristically blurry and very cold due to mixing of fresh groundwater that flows down through the porous limestone of the hills and up out of fissures in the coral-rock pavement just beyond the shore. I paddled around in the shallows and grassbeds and over to the backreef, killing time mainly, looking at a sea hare undulating in the grass here or an anemone there. It was a beautiful, very placid evening and the atmosphere took on the magical quality that comes over water at this time of day in calm weather. Suddenly it occurred to me that the Sea was quiet enough that I might make it through maze of the very shallow reef crest, which is normally impassably pounded by surf. Charged with a little adrenaline by the swell rolling over the treacherous outcrops, even as lazy as it was, I pumped through a little channel in the reef, working gingerly but quickly, hand over hand, along the brown seaweed-covered rock, chest nearly scraping bottom in places, and finally shot out the other side.
Even after reading for years about Jamaica as the poster child of coral reef ecosystem collapse, the scene shocked me. It literally looked like the scene of a bombing — the place was littered with slabs of broken coral lying everywhere, the sense of desolation heightened by the nearly complete absence of any macroscopic life. Very little live coral, almost no algae, no sponges or soft corals. It was a striking picture of a wasteland. And this is nearly three decades after Hurrican Allen dealt Jamaica the final blow that knocked the teetering ecosystem out. By now the grazing sea urchins have come back with a vengeance and are bristling from every cervice and overhang. The algae are accordingly scarce, which bodes well for the return of live coral, but I still saw little sign of coral recovery. Quite unsettling.
But the darkening ocean seemed to invite me and I swam on over the deepening reef. The water was very clear, at least 50 feet of visibility, and seemed to hold the light with that indescribable, intrinsic luminosity found at dusk underwater. The rocky spurs sloped away steadily and soon I floated like one of the light motionless frigatebirds over an expansive reefscape, maybe 30 feet deep, with canyons of white sand going blue in the fading light between the dusky bulwarks of encrusted coral rock. Here and there were big flat plates of living mustard-colored coral, and a few other species in the deeper water, which gave me a seed of hope. There is still life, and it is still kicking. A small shoal of electric blue Chromis flitted above a coral head, and algae and soft corals swayed rhythmically in the gentle swell, back and forth, back and forth. This, I realized with sudden certainty, is why I come, why I continue to come back to the reef. I was filled with a powerful sense of calm and gratitude and harmony. I realized also that this was a gift, dropped in my lap when least expected, after climbing into the water for the last time in a rote way, preoccupied and without awareness. I hovered there for some time, then swam back in the dusk. Everything looked different on the way back.









If you were an alien arriving on earth for a visit, what would you see? If you came in over one of the mega-cities that increasingly cover the earth’s surface, roughly a third of your field of view would be rooftops. And beneath them would be a lot of concrete, asphalt, glass, and metal.
For example, the graph at right shows how retention of storm-water runoff was enhanced in a green-roof test plot in Canada. The green roof had 15 centimeters of growing medium (soil, approximately) and was planted with plain old lawn grasses (I wonder if it needs mowing). In every month other than June, the green roof retained a large fraction of the water that would otherwise run off, as compared with an adjacent conventional roof of the same size.
Green roofs also provide insulation that buffers buildings from temperature fluctuations. The graphs at left show heat flux across roof membranes for different roofing systems in Canada (positive and negative values are flux in and out of the house respectively). The graphs show results for a summer (top) and winter (bottom) day. The green roof strongly reduced temperature fluctuations, especially in summer.
Germany led the way in modern green roof use, beginning in the early 1900s for the specific purpose of reducing exposure damage to roofing materials. Today, the German government provides incentives for green roof construction and it’s estimated that about 14% of new roofs under construction there will be vegetated. There are course many challenges to growing such gardens in thin soil atop buildings where they are exposed to harsh conditions of desiccation and wind. Ideal candidate species are native stress-tolerant plants that are already adapted to local conditions. One of the most ambitious green-roof projects in the US is the recently built roof on the California Academy of Sciences building, which mimics the natural hilly contours of the San Francisco Bay area and is planted with native vegetation (see a cool video of the roof being built
But green roofs are more than engineering projects. Oberndorfer and colleagues look at them as mini-ecosystems and emphasize how understanding the ecological interactions among the soil, microorganisms, and vegetation (and even goats?!) influence the ecosystem’s functioning and the benefits provided to us, one of which is that they help maintain habitat for other species:
[Editor’s note: Walt Whitman – a cosmos, of 
Dear friends, colleagues, family members, sparring partners, lost souls, and passers-by,
So there you have it. Sorry I can’t throw a wild birthday party — I’ve learned a surprising amount of HTML and other arcane geekana in the last year, but haven’t yet figured out how to do that online. But if you happen to feel inspired about a birthday gift, there’s no need to send cash, baked goods, or expensive merchandise (although I will surely not turn them down). Instead, it would warm the cockles of the Natural Patriot’s heart if you simply tell a friend about the site (something good, I mean), subscribe by RSS if you haven’t already, and . . .
The list (of 50) is out at
The Ecological Society of America, the Nation’s leading body of professional ecological scientists (of which I am a proud member), has released a position statement on biofuels sustainability. The full text is
“1. SYSTEMS THINKING. A systems approach is crucial to assess the energy yield, carbon neutrality, and the full impact of biofuel production on downstream and downwind ecosystems. It should take into account all of the flows, controls, and storage of materials and energy.
“The current focus on ethanol from corn illustrates the risks of exploiting a single source of biomass for biofuel production. A growing percentage of the U.S. corn harvest – 18 percent in 2006 – is directed towards grain ethanol production. This has not only resulted in record-high corn prices, it has produced strong incentives for continuously-grown corn, higher-than-optimal use of nitrogen fertilizers, the early return of land in conservation programs to production, and the conversion of marginal lands to high-intensity cropping. All of these changes exacerbate well-known environmental problems associated with intensive agriculture:
[Editor’s note: There appears to be a growing trend among bloggers featuring some theme on Fridays, which I find an attractive idea. Therefore, on Fridays, the Natural Patriot will be featuring . . . poetry. Why? Because poetry gets closer to the heart and soul of what we really value in Nature than the science and wonkish policy that we spend so much time discussing, important as that is. This will have to be experimental because, alas, the computer interface has a certain unfortunate dissonance with the spirit of poetry, which is best kindled in a state of slow, quiet reflection foreign to the web. Nevertheless, it’s the medium of our day. I can’t guarantee a contribution every week because, well, I have a day job. So here it is, the first installment. If you like this piece, I highly recommend 
Not so long ago, biofuels seemed like the holy grail we’d all been looking for. After the euphoria came the
This is not just a flash in the oilpan, so to speak. Shell
But it can be done, at least on the level of a demonstration project. This past October saw the 
What could be a more iconic zoological symbol of the transformation of the environment into a thoroughly human construct than the feral pigeon? To a modern human cliff-dweller in the canyons of the world’s metropoli, this humble creature is by far most familiar vertebrate, bobbing amongst the park benches with its deliberate, comical gait, searching for stale potato chips and other such urban flotsam, defiling the noble bronze heads of olden-day heroes in the public square. Their familiarity has bred our contempt. That and their astonishing capacity to turn urban garbage into bird biomass and guano.
But it was not always thus. Look closely and you can see the ghost of a beautiful and noble bird beneath the grime and worn feathers. The iridescent sheen of the nape, the soft gray plumage, the handsome wing bars. The lowly pigeon was among the very first animals to be domesticated by humans, appearing in the first known written documents in Mesopotamia more than 5000 years ago, and has a
But there may be trouble brewing for metropolitan pigeons, at least in the suburbs of the UK. It appears that their rustic country cousins are muscling in on their territory. The
The old adage uses the canary in the coal mine as a barometer of impending danger. It seems unlikely that pigeons could really be in much danger, even under this new competition, given the long strange trip of their assocation with humanity over the last 6000 years or so. Still, who would have thought that anything could beat a pigeon– even another pigeon? Regardless of whether pigeons are endangered, this is surely prophetic of profound changes in our ecosystem. Perhaps, contra the ancient wisdom, there is